QIIME 2 integrates dozens of plugins and hundreds of bioinformatics methods, allowing users to perform cutting-edge microbiome analysis with interactive visualizations and robust statistical tools.

In general, we suggest referring to the QIIME 2 website (https://qiime2.org), which will always be the most up-to-date source for information and tutorials on QIIME 2, including newer versions of this …

You can still access the content from the “old docs” here for the QIIME 2 2024.10 and earlier releases, but we recommend that you transition to the new documentation at https://amplicon-docs.qiime2.org. …

The following headers must be returned by the server in order for view.qiime2.org to be able to read the response. If they are not set, then the browser will deny access under the Same-Origin Policy.

You can still access the content from the “old docs” here for the QIIME 2 2024.10 and earlier releases, but we recommend that you transition to the new documentation at https://amplicon-docs.qiime2.org. …

Sometimes you’ll install these directly, and sometimes you’ll install QIIME 2 distributions which are bundles of plugins intended to be used together. In this case, we’re going to install one specific …

Jan 28, 2026 · As promised in this recent announcement, the qiime2 framework has been renamed to rachis. It can be found at rachis-org/rachis on Github. @ebolyen wrote a backwards compatibility …

Installation Amplicon

You can still access the content from the “old docs” here for the QIIME 2 2024.10 and earlier releases, but we recommend that you transition to the new documentation at https://amplicon-docs.qiime2.org. …

Sometimes you’ll install these directly, and sometimes you’ll install QIIME 2 distributions which are bundles of plugins intended to be used together. In this case, we’re going to install one specific …